Skip to content

Update Literature#501

Open
github-actions[bot] wants to merge 50 commits into
mainfrom
update-data
Open

Update Literature#501
github-actions[bot] wants to merge 50 commits into
mainfrom
update-data

Conversation

@github-actions

@github-actions github-actions Bot commented Jul 2, 2026

Copy link
Copy Markdown
Contributor

Please edit this description as you work on this PR

Description

This PR introduces changes from automated literature retrieval followed by manual curation.

Fixes: # Link to any relevant issues and/or discussions

Major Changes

-Gave a mechanism to CJD_PRNP

Minor Changes

  • Added expansion size/age of onset correlation for epileptic phenotype DRPLA_ATN1
  • Added guatemala to SCA10_ATXN10 prevalence
  • Added SCA2_ATXN2 cognitive symptoms
  • Added expanded circRNA for SCA7_ATXN7
  • Changed SCA7_ATXN7 age of onset to 92
  • Added SCA27B_FGF14 cognitive symptoms
  • Added trans-acting modifiers to HD_HTT
  • Added stroke like episodes to NIID_NOTCH2NLC
  • Clarified GoF for FTDALS1_C9orf72
  • Added additional source for foci maintenance DM1_DMPK
  • Added paternal transmission info DM1_DMPK
  • Added RAN translation FMR1_FXTAS
  • Added OGM detection info FMR1_FXTAS
  • Added LRS source FMR1_FXTAS
  • Added Dysphagia FRDA_FXN
  • Added LR-PCR/RP-PCR failure FRDA_FXN
  • added LRS source FRDA_FXN
  • prevalence updated to 20 families SCA4_ZFHX3

Checklist

  • Check I've included all literature since the last "Literature Update" PR (may need to diff against an earlier version)
  • Check for updates to existing loci
  • Check for potential new loci
  • Add any changes to STRchive-loci.json as commits to this branch/PR
  • If anything needs to be discussed further before adding to STRchive, add it to Discussions
  • Check all tests pass e.g. the website built
  • Check that the website preview looks good
  • Update the STRchive version in CITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.
  • Ask someone to review this PR

@netlify

netlify Bot commented Jul 2, 2026

Copy link
Copy Markdown

Deploy Preview for strchive ready!

Name Link
🔨 Latest commit a8b4a1c
🔍 Latest deploy log https://app.netlify.com/projects/strchive/deploys/6a591ea9aeb7040008cf4fe7
😎 Deploy Preview https://deploy-preview-501--strchive.netlify.app
📱 Preview on mobile
Toggle QR Code...

QR Code

Use your smartphone camera to open QR code link.

To edit notification comments on pull requests, go to your Netlify project configuration.

gaberbz and others added 10 commits July 6, 2026 10:17
PMID 42359808 supports the understanding that the epileptic phenotype is associated with a large repeat size and earlier age of onset. It also shows that there is a significant correlation between repeat size and  age of onset for those presenting first with epilepsy, but not for those presenting first with gait instability.
I omitted the dementia finding from 10219787 as they were found to all be related, and the other studies showed no significant association with dementia
@gaberbz gaberbz self-assigned this Jul 7, 2026
@gaberbz
gaberbz requested a review from hdashnow July 15, 2026 16:20
@hdashnow

hdashnow commented Jul 16, 2026

Copy link
Copy Markdown
Member

I just created some merge conflicts by merging another PR into main. I'll fix these before merging. I know you requested review, but I saw a few more edits after. Let me know when you're done editing (for now).

@gaberbz

gaberbz commented Jul 16, 2026

Copy link
Copy Markdown
Contributor

I just created some merge conflicts by merging another PR into main. I'll fix these before merging. I know you requested review, but I saw a few more edits after. Let me know when you're done editing (for now).

It is ready for review now

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants