feat(metadata): sync up core scripts - #1
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Sync core-path changes from dev branch (fa91040, 66f8a31, 7f5611c).
add GAP_PENALTY constant. Pure refactor, behavior unchanged.
ph / crystal_grow_temp / diffrn_temp from the RCSB entry JSON already fetched
for experiment_condition. ph falls back to the pdbx_pH_range string, so the
column is object dtype, not float.