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add prune_chart_to_tree to filter chart strains absent from the tree#7

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jbloom merged 1 commit into
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prune-chart-to-tree
May 20, 2026
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add prune_chart_to_tree to filter chart strains absent from the tree#7
jbloom merged 1 commit into
mainfrom
prune-chart-to-tree

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@jbloom jbloom commented May 20, 2026

Mirror of prune_tree_to_chart, for the opposite asymmetry: chart spec contains strains that aren't tree tips (e.g. a multi-subtype titer JSON plotted against a subtype-specific tree). With the flag on, those rows are filtered out of inline data.values, named datasets, and any explicit sort list on the strain axis before drawing. Closes #6.

Mirror of prune_tree_to_chart, for the opposite asymmetry: chart spec
contains strains that aren't tree tips (e.g. a multi-subtype titer JSON
plotted against a subtype-specific tree). With the flag on, those rows
are filtered out of inline data.values, named datasets, and any explicit
sort list on the strain axis before drawing. Closes #6.
@jbloom jbloom merged commit 5daf73b into main May 20, 2026
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@jbloom jbloom deleted the prune-chart-to-tree branch May 20, 2026 00:20
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Plotting interface lacks an option to prune chart strains to those present in the tree

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