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3DStitch.txt
3DStitch.txt
 
 
BatchConvert8bitNrrdTo16bitNrrd.txt
BatchConvert8bitNrrdTo16bitNrrd.txt
 
 
BatchConvertAnyToNrrd.txt
BatchConvertAnyToNrrd.txt
 
 
BatchConvertAnyToNrrdAddingJaneliaCalibration.ijm
BatchConvertAnyToNrrdAddingJaneliaCalibration.ijm
 
 
BatchConvertFlycircuitLSMsToNrrds.txt
BatchConvertFlycircuitLSMsToNrrds.txt
 
 
BatchConvertLSMsToNrrds_Jonny.txt
BatchConvertLSMsToNrrds_Jonny.txt
 
 
BatchConvertLSMsToPICs.txt
BatchConvertLSMsToPICs.txt
 
 
BatchConvertLSMsToPICsRespectingChannels.txt
BatchConvertLSMsToPICsRespectingChannels.txt
 
 
BatchConvertLSMsToPICsRespectingChannelsLeft.txt
BatchConvertLSMsToPICsRespectingChannelsLeft.txt
 
 
BatchConvertLSMsToPICsRespectingChannelsOld.txt
BatchConvertLSMsToPICsRespectingChannelsOld.txt
 
 
BatchConvertLSMsToPICsRespectingChannelsRotate180.txt
BatchConvertLSMsToPICsRespectingChannelsRotate180.txt
 
 
BatchConvertNRRDToZProjJPGS.txt
BatchConvertNRRDToZProjJPGS.txt
 
 
BatchConvertNrrdToAmira.txt
BatchConvertNrrdToAmira.txt
 
 
BatchConvertNrrdToPIC.txt
BatchConvertNrrdToPIC.txt
 
 
BatchConvertNrrdsToJpgsRespectingFolders.txt
BatchConvertNrrdsToJpgsRespectingFolders.txt
 
 
BatchConvertNrrdsToJpgsRespectingFoldersCommandline.txt
BatchConvertNrrdsToJpgsRespectingFoldersCommandline.txt
 
 
BatchConvertNrrdsToJpgsRespectingFoldersResliceZ.txt
BatchConvertNrrdsToJpgsRespectingFoldersResliceZ.txt
 
 
BatchConvertStacksToZProjJPGS.txt
BatchConvertStacksToZProjJPGS.txt
 
 
BatchConvertStacksToZProjJPGS.txt.ijm
BatchConvertStacksToZProjJPGS.txt.ijm
 
 
BatchConvertStacksToZProjJPGSRespectingChannels.txt
BatchConvertStacksToZProjJPGSRespectingChannels.txt
 
 
BatchConvertSytBrainLSMsToPICs090617.txt
BatchConvertSytBrainLSMsToPICs090617.txt
 
 
BatchConvertSytBrainLSMsToPICsGJAC.txt
BatchConvertSytBrainLSMsToPICsGJAC.txt
 
 
BatchConvertTifToPIC.txt
BatchConvertTifToPIC.txt
 
 
BatchConvertVNCsLSMsToPICs.txt
BatchConvertVNCsLSMsToPICs.txt
 
 
BatchDownsampleAmiraRespectingFolders.txt
BatchDownsampleAmiraRespectingFolders.txt
 
 
BatchFlipPICsHorizontally.txt
BatchFlipPICsHorizontally.txt
 
 
BatchGetLHSections.txt
BatchGetLHSections.txt
 
 
BatchKalmanFilter.txt
BatchKalmanFilter.txt
 
 
BatchParseLSMMetadata.txt
BatchParseLSMMetadata.txt
 
 
BatchProjectTif.txt
BatchProjectTif.txt
 
 
BatchRotatePics180.txt
BatchRotatePics180.txt
 
 
BatchSimpleCaTrace.txt
BatchSimpleCaTrace.txt
 
 
BatchStackregTiffs.ijm
BatchStackregTiffs.ijm
 
 
BlendTwoGreenChannels.ijm
BlendTwoGreenChannels.ijm
 
 
GMR-LexA_easyopen.ijm
GMR-LexA_easyopen.ijm
 
 
MakeMontageDimorphicConnections.txt
MakeMontageDimorphicConnections.txt
 
 
OpenImagesInImage5D.txt
OpenImagesInImage5D.txt
 
 
ReverseAndFlipNrrds.txt
ReverseAndFlipNrrds.txt
 
 
flylight_easyopen.ijm
flylight_easyopen.ijm
 
 
openForJonnyTracing.txt
openForJonnyTracing.txt
 
 
openImage-setMinMax.txt
openImage-setMinMax.txt
 
 
openItoBrainMap.txt
openItoBrainMap.txt
 
 
openLSMInImage5D.txt
openLSMInImage5D.txt
 
 
openStackorRGBinImage5d.txt
openStackorRGBinImage5d.txt
 
 
transformImage.txt
transformImage.txt
 
 

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General Jefferis Lab ImageJ macros – e.g. split lsms

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