Bremer (decay) support via converse-constraint + pool#270

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ms609 wants to merge 24 commits into

claude/bremer-support-calculation-857d5f

Commits on Jul 10, 2026

fix(bremer): guard converse sector/prune-reinsert against rebuilding the forbidden clade

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fix(bremer): validate optimalScore, make censored attr consistent, strip pool-size overrides

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fix(bremer): make the scoring-mismatch guard a reliable warning, not a fuzzy error

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feat(bremer): record scoring provenance on MaximizeParsimony output; check it exactly in Bremer

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test(bremer): cover zero-clade early return and pool-eviction score alignment

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test(bremer): close TA-3/TA-4 via a search-injection seam

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Merge cpp-search into bremer-support-calculation

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fix(bremer): green the R CMD check (examples, spelling, docs, deps)

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fix(bremer): make the runnable example cheap, seeded, and hang-proof

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fix(bremer): run the example serially (nThreads = 1)

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Commits on Jul 11, 2026

Commits on Jul 12, 2026