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Bump shinyngs modules to r-shinyngs 3.2.1 #12428

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Merged
pinin4fjords merged 1 commit into from
Jul 24, 2026
Merged

Bump shinyngs modules to r-shinyngs 3.2.1 #12428

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12 changes: 6 additions & 6 deletions ...ock/linux_amd64-bd-19cca4636e20b0f7_1.txt → ...ock/linux_amd64-bd-d43071e62bc500d3_1.txt
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12 changes: 6 additions & 6 deletions ...ock/linux_arm64-bd-71dbb9a6ee95bc28_1.txt → ...ock/linux_arm64-bd-d168a374ce5dc1af_1.txt
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2 changes: 1 addition & 1 deletion modules/nf-core/shinyngs/app/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::r-shinyngs=3.2.0
- bioconda::r-shinyngs=3.2.1
4 changes: 2 additions & 2 deletions modules/nf-core/shinyngs/app/main.nf
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Expand Up @@ -14,8 +14,8 @@ process SHINYNGS_APP {

conda "${moduleDir}/environment.yml"
container "${workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/41/41759558393509662940440e609bd5e89e4ec0d4b02c09421923fa0270926666/data'
: 'community.wave.seqera.io/library/r-shinyngs:3.2.0--19cca4636e20b0f7'}"
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/d5/d5f79ef0afe3e3831496c61c81aeda56312f49ac324dc378d3312af7acae2ec6/data'
: 'community.wave.seqera.io/library/r-shinyngs:3.2.1--d43071e62bc500d3'}"

input:
tuple val(meta), path(sample), path(feature_meta), path(assay_files) // Experiment-level info
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28 changes: 14 additions & 14 deletions modules/nf-core/shinyngs/app/meta.yml
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Expand Up @@ -116,24 +116,24 @@ maintainers:
containers:
docker:
linux/amd64:
name: community.wave.seqera.io/library/r-shinyngs:3.2.0--19cca4636e20b0f7
build_id: bd-19cca4636e20b0f7_1
scan_id: sc-501add0467d2f061_1
name: community.wave.seqera.io/library/r-shinyngs:3.2.1--d43071e62bc500d3
build_id: bd-d43071e62bc500d3_1
scan_id: sc-5ac2dcb847246bad_1
linux/arm64:
name: community.wave.seqera.io/library/r-shinyngs:3.2.0--71dbb9a6ee95bc28
build_id: bd-71dbb9a6ee95bc28_1
scan_id: sc-0b57ec15282cc0fe_1
name: community.wave.seqera.io/library/r-shinyngs:3.2.1--d168a374ce5dc1af
build_id: bd-d168a374ce5dc1af_1
scan_id: sc-0f3dfab20873614f_1
singularity:
linux/amd64:
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.0--c8c7c602b7ecaf69
build_id: bd-c8c7c602b7ecaf69_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/41/41759558393509662940440e609bd5e89e4ec0d4b02c09421923fa0270926666/data
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.1--b810af5b9efbb4b2
build_id: bd-b810af5b9efbb4b2_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/d5/d5f79ef0afe3e3831496c61c81aeda56312f49ac324dc378d3312af7acae2ec6/data
linux/arm64:
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.0--537d87067431146d
build_id: bd-537d87067431146d_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/a0/a0bd003b3b7ca7b4081291d4b2cf34b41afb8cf1dd18ffb6f3c7134aaa00c7df/data
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.1--ed7d3904b821c0a8
build_id: bd-ed7d3904b821c0a8_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/74/74ebb0b4cfa12e1174262987ffa0559ab388198ba94196a4fd295ce5a9051a22/data
conda:
linux/amd64:
lock_file: modules/nf-core/shinyngs/app/.conda-lock/linux_amd64-bd-19cca4636e20b0f7_1.txt
lock_file: modules/nf-core/shinyngs/app/.conda-lock/linux_amd64-bd-d43071e62bc500d3_1.txt
linux/arm64:
lock_file: modules/nf-core/shinyngs/app/.conda-lock/linux_arm64-bd-71dbb9a6ee95bc28_1.txt
lock_file: modules/nf-core/shinyngs/app/.conda-lock/linux_arm64-bd-d168a374ce5dc1af_1.txt
8 changes: 4 additions & 4 deletions modules/nf-core/shinyngs/app/tests/main.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
[
"SHINYNGS_APP",
"shinyngs",
"3.2.0"
"3.2.1"
]
]
}
Expand All @@ -28,7 +28,7 @@
[
"SHINYNGS_APP",
"shinyngs",
"3.2.0"
"3.2.1"
]
]
}
Expand All @@ -48,7 +48,7 @@
[
"SHINYNGS_APP",
"shinyngs",
"3.2.0"
"3.2.1"
]
]
}
Expand All @@ -68,7 +68,7 @@
[
"SHINYNGS_APP",
"shinyngs",
"3.2.0"
"3.2.1"
]
]
}
Expand Down
12 changes: 6 additions & 6 deletions ...ock/linux_amd64-bd-19cca4636e20b0f7_1.txt → ...ock/linux_amd64-bd-d43071e62bc500d3_1.txt
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12 changes: 6 additions & 6 deletions ...ock/linux_arm64-bd-71dbb9a6ee95bc28_1.txt → ...ock/linux_arm64-bd-d168a374ce5dc1af_1.txt
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2 changes: 1 addition & 1 deletion modules/nf-core/shinyngs/staticdifferential/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::r-shinyngs=3.2.0
- bioconda::r-shinyngs=3.2.1
4 changes: 2 additions & 2 deletions modules/nf-core/shinyngs/staticdifferential/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process SHINYNGS_STATICDIFFERENTIAL {

conda "${moduleDir}/environment.yml"
container "${workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/41/41759558393509662940440e609bd5e89e4ec0d4b02c09421923fa0270926666/data'
: 'community.wave.seqera.io/library/r-shinyngs:3.2.0--19cca4636e20b0f7'}"
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/d5/d5f79ef0afe3e3831496c61c81aeda56312f49ac324dc378d3312af7acae2ec6/data'
: 'community.wave.seqera.io/library/r-shinyngs:3.2.1--d43071e62bc500d3'}"

input:
tuple val(meta), path(differential_result) // Differential info: contrast and differential stats
Expand Down
30 changes: 15 additions & 15 deletions modules/nf-core/shinyngs/staticdifferential/meta.yml
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Expand Up @@ -100,25 +100,25 @@ maintainers:
- "@pinin4fjords"
containers:
docker:
linux/arm64:
name: community.wave.seqera.io/library/r-shinyngs:3.2.0--71dbb9a6ee95bc28
build_id: bd-71dbb9a6ee95bc28_1
scan_id: sc-0b57ec15282cc0fe_1
linux/amd64:
name: community.wave.seqera.io/library/r-shinyngs:3.2.0--19cca4636e20b0f7
build_id: bd-19cca4636e20b0f7_1
scan_id: sc-501add0467d2f061_1
name: community.wave.seqera.io/library/r-shinyngs:3.2.1--d43071e62bc500d3
build_id: bd-d43071e62bc500d3_1
scan_id: sc-5ac2dcb847246bad_1
linux/arm64:
name: community.wave.seqera.io/library/r-shinyngs:3.2.1--d168a374ce5dc1af
build_id: bd-d168a374ce5dc1af_1
scan_id: sc-0f3dfab20873614f_1
singularity:
linux/amd64:
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.0--c8c7c602b7ecaf69
build_id: bd-c8c7c602b7ecaf69_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/41/41759558393509662940440e609bd5e89e4ec0d4b02c09421923fa0270926666/data
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.1--b810af5b9efbb4b2
build_id: bd-b810af5b9efbb4b2_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/d5/d5f79ef0afe3e3831496c61c81aeda56312f49ac324dc378d3312af7acae2ec6/data
linux/arm64:
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.0--537d87067431146d
build_id: bd-537d87067431146d_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/a0/a0bd003b3b7ca7b4081291d4b2cf34b41afb8cf1dd18ffb6f3c7134aaa00c7df/data
name: oras://community.wave.seqera.io/library/r-shinyngs:3.2.1--ed7d3904b821c0a8
build_id: bd-ed7d3904b821c0a8_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/74/74ebb0b4cfa12e1174262987ffa0559ab388198ba94196a4fd295ce5a9051a22/data
conda:
linux/amd64:
lock_file: modules/nf-core/shinyngs/staticdifferential/.conda-lock/linux_amd64-bd-19cca4636e20b0f7_1.txt
lock_file: modules/nf-core/shinyngs/staticdifferential/.conda-lock/linux_amd64-bd-d43071e62bc500d3_1.txt
linux/arm64:
lock_file: modules/nf-core/shinyngs/staticdifferential/.conda-lock/linux_arm64-bd-71dbb9a6ee95bc28_1.txt
lock_file: modules/nf-core/shinyngs/staticdifferential/.conda-lock/linux_arm64-bd-d168a374ce5dc1af_1.txt
6 changes: 3 additions & 3 deletions modules/nf-core/shinyngs/staticdifferential/tests/main.nf.test.snap
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Expand Up @@ -10,7 +10,7 @@
[
"SHINYNGS_STATICDIFFERENTIAL",
"shinyngs",
"3.2.0"
"3.2.1"
]
]
}
Expand Down Expand Up @@ -52,14 +52,14 @@
[
"SHINYNGS_STATICDIFFERENTIAL",
"shinyngs",
"3.2.0"
"3.2.1"
]
],
"versions_shinyngs": [
[
"SHINYNGS_STATICDIFFERENTIAL",
"shinyngs",
"3.2.0"
"3.2.1"
]
],
"volcanos_html": [
Expand Down
12 changes: 6 additions & 6 deletions ...ock/linux_amd64-bd-19cca4636e20b0f7_1.txt → ...ock/linux_amd64-bd-d43071e62bc500d3_1.txt
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12 changes: 6 additions & 6 deletions ...ock/linux_arm64-bd-71dbb9a6ee95bc28_1.txt → ...ock/linux_arm64-bd-d168a374ce5dc1af_1.txt
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2 changes: 1 addition & 1 deletion modules/nf-core/shinyngs/staticexploratory/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::r-shinyngs=3.2.0
- bioconda::r-shinyngs=3.2.1
4 changes: 2 additions & 2 deletions modules/nf-core/shinyngs/staticexploratory/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process SHINYNGS_STATICEXPLORATORY {

conda "${moduleDir}/environment.yml"
container "${workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/41/41759558393509662940440e609bd5e89e4ec0d4b02c09421923fa0270926666/data'
: 'community.wave.seqera.io/library/r-shinyngs:3.2.0--19cca4636e20b0f7'}"
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/d5/d5f79ef0afe3e3831496c61c81aeda56312f49ac324dc378d3312af7acae2ec6/data'
: 'community.wave.seqera.io/library/r-shinyngs:3.2.1--d43071e62bc500d3'}"

input:
tuple val(meta), path(sample), path(feature_meta), path(assay_files), val(variable)
Expand Down
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