Repositories list

• RamplotR

  Public
  R shiny app for making Ramachandran plots

  shiny

  shiny

  R

  •

  MIT License

  •5151 forks•55 stars•00 issues•00 pull requests•Updated Feb 25, 2025Feb 25, 2025

• MAniR

  Public
  Maldi and ANI correlation plot visualizer shiny app

  visualizationdiversityr+ 7

  visualizationdiversityrcorrelationgenomicsshinyheatmapdata-analysiscorrelation-analysiscorrplot

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•11 pull request•Updated Feb 18, 2024Feb 18, 2024

• Rhea_pipeline

  Public
  Shiny app for a workflow from the Rhea pipeline

  shiny

  shiny

  R

  •

  MIT License

  •33 forks•55 stars•00 issues•00 pull requests•Updated Feb 22, 2023Feb 22, 2023

• MS-PEP

  Public
  A shiny app to analyze mass spectrometry data for peptide cleavage patterns

  shiny

  shiny

  R

  •1414 forks•22 stars•00 issues•11 pull request•Updated Dec 23, 2021Dec 23, 2021

• Fasta_to_GFA

  Public
  A small python script converting Fasta files to GFA files for visualization in Bandage

  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 26, 2021Oct 26, 2021

• ggdc-robot

  Public
  Automatically submit jobs to the Genome-to-Genome Distance Calculator (GGDC) website.

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 2, 2021Sep 2, 2021

• Flye

  Public
  De novo assembler for single molecule sequencing reads using repeat graphs

  C

  •

  Other

  •179179 forks•00 stars•00 issues•00 pull requests•Updated Jun 27, 2021Jun 27, 2021

• pysam

  Public
  Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, …

  C

  •

  MIT License

  •295295 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2020Apr 6, 2020

• blast-example

  Public
  A basic blast pipeline using nextflow

  Nextflow

  •1717 forks•00 stars•00 issues•00 pull requests•Updated Feb 29, 2020Feb 29, 2020