Repositories list

• DEploid-r

  Public
  An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid …

  hmmcranparasites+ 5

  hmmcranparasitesmalariamcmcphasingdeconvoluting-mixed-genomesunknown-proportions

  R

  •

  GNU General Public License v3.0

  •33 forks•11 star•1212 issues•00 pull requests•Updated Jan 21, 2025Jan 21, 2025

• DEploid

  Public
  dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifi…

  parasitesmalariamcmc+ 4

  parasitesmalariamcmcphasinghmm-modeldeconvoluting-mixed-genomesunknown-proportions

  C++

  •

  GNU General Public License v3.0

  •1010 forks•2121 stars•2121 issues•00 pull requests•Updated Jan 20, 2025Jan 20, 2025

• DEploid.utils

  Public
  R

  •

  Apache License 2.0

  •11 fork•11 star•22 issues•00 pull requests•Updated Dec 23, 2024Dec 23, 2024

• DEploid-vcf-lib

  Public
  C++

  •

  Apache License 2.0

  •00 forks•11 star•22 issues•00 pull requests•Updated Dec 23, 2024Dec 23, 2024

• DEploid-Bestpractices-github-actions

  Public
  Apache License 2.0

  •00 forks•00 stars•22 issues•00 pull requests•Updated Jan 10, 2021Jan 10, 2021

• deploid-dev.github.io

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 6, 2020Jun 6, 2020

• DEploid-Lasso-lib

  Public
  R

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 31, 2019Oct 31, 2019

• DEploid-Bestpractices-Benchmark-in_silico_field

  Public
  Shell

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 4, 2019Aug 4, 2019

• DEploid-Data-Benchmark-in_silico_field

  Public
  R

  •

  Apache License 2.0

  •11 fork•00 stars•22 issues•00 pull requests•Updated Aug 4, 2019Aug 4, 2019

• DEploid-Data-Benchmark-in_silico_lab_mixed_4s

  Public
  R

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 4, 2019Aug 4, 2019

• mixedIBD

  Public
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2019Jun 26, 2019

• README

  Public
  DEploid-dev README

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 12, 2018Dec 12, 2018

• DEploid-Bestpractices-Benchmark-mixed4s

  Public
  Shell

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 29, 2018Nov 29, 2018

• DEploid-py

  Public
  Python interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploi…

  C++

  •

  GNU General Public License v3.0

  •00 forks•00 stars•33 issues•00 pull requests•Updated Nov 15, 2018Nov 15, 2018

• DEploid-Supplementary-Materials

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 3, 2018May 3, 2018

• DEploid-ShinyApp

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•77 issues•00 pull requests•Updated Aug 15, 2017Aug 15, 2017

• dEploidPaper

  Public
  TeX

  •00 forks•00 stars•22 issues•00 pull requests•Updated Jul 20, 2017Jul 20, 2017