Repositories list

• RNA-seq

  Public
  Jupyter Notebook

  •33 forks•99 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• HLA_benchmark

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Oct 31, 2025Oct 31, 2025

• Mangul-Lab-USC.github.io

  Public
  Website for Mangul Lab.

  bioinformaticsgenomicscomputational-biology

  bioinformaticsgenomicscomputational-biology

  Jupyter Notebook

  •77 forks•88 stars•00 issues•00 pull requests•Updated Sep 15, 2025Sep 15, 2025

• metadata-completeness

  Public
  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 4, 2025Aug 4, 2025

• Biomedical-Data-Science

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 19, 2024Sep 19, 2024

• DBMerge

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 27, 2024Aug 27, 2024

• preprints-project

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2024Aug 26, 2024

• reTCR

  Public
  TCR repertoire analysis in R

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 21, 2024Aug 21, 2024

• code-availability

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 31, 2024May 31, 2024

• VISTA

  Public
  Python

  •11 fork•77 stars•00 issues•11 pull request•Updated May 15, 2024May 15, 2024

• VISTA_paper

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2024Apr 25, 2024

• imrep

  Public
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

  C

  •1313 forks•1111 stars•00 issues•00 pull requests•Updated Apr 11, 2024Apr 11, 2024

• PharmBioinfo

  Public
  C

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 6, 2024Jan 6, 2024

• BioLLMBench

  Public
  Jupyter Notebook

  •00 forks•66 stars•00 issues•00 pull requests•Updated Dec 20, 2023Dec 20, 2023

• CXPT-501-Fall_23

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 1, 2023Nov 1, 2023

• ISBRA23

  Public
  https://mangul-lab-usc.github.io/ISBRA23/

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2023Oct 10, 2023

• ISBRA22

  Public
  https://mangul-lab-usc.github.io/ISBRA22/

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2023Oct 10, 2023

• biomedical_data_science

  Public
  55 forks•44 stars•00 issues•00 pull requests•Updated Aug 24, 2023Aug 24, 2023

• microbiome_master_db

  Public
  Creating a master reference database for metagenomic research

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2023Jun 22, 2023

• EEBG2023

  Public
  https://mangul-lab-usc.github.io/EEBG2023/

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jun 2, 2023Jun 2, 2023

• genomic-deserts-publication

  Public
  genomic-deserts

  MIT License

  •11 fork•00 stars•00 issues•11 pull request•Updated May 16, 2023May 16, 2023

• TCR-profiling-benchmark

  Public
  Jupyter Notebook

  •77 forks•33 stars•00 issues•11 pull request•Updated Apr 21, 2023Apr 21, 2023

• omics-data-reusability

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 17, 2023Apr 17, 2023

• _ISBRA22

  Public
  Website for ISBRA '22 conference

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 10, 2023Mar 10, 2023

• Bioinformatics-for-Ukraine

  Public
  https://mangul-lab-usc.github.io/Bioinformatics-for-Ukraine/

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2022Dec 19, 2022

• EM-GEDIT

  Public
  GEDIT coupled with EM algorithm

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 20, 2022Nov 20, 2022

• pyTCR

  Public
  Jupyter Notebook

  •

  MIT License

  •33 forks•1111 stars•33 issues•00 pull requests•Updated Oct 25, 2022Oct 25, 2022

• EBCG

  Public
  https://mangul-lab-usc.github.io/EBCG/

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Sep 20, 2022Sep 20, 2022

• pyTCR_publication

  Public
  Jupyter Notebook

  •00 forks•22 stars•11 issue•00 pull requests•Updated Sep 9, 2022Sep 9, 2022

• Introduction-to-bioinformatics-and-biomedical-data-science

  Public
  This is a six module graduate-level course covering the fundamentals of transparent and reproducible bioinformatics, targeted towards biomedical students.

  Jupyter Notebook

  •22 forks•22 stars•00 issues•00 pull requests•Updated Aug 31, 2022Aug 31, 2022