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@ReproNim Center for Reproducible Neuroimaging Computation

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    115 repositories

    • containers

      Public
      Containers "distribution" for reproducible neuroimaging
      Python
      •
      Apache License 2.0
      •17•30•41•7•Updated May 7, 2026May 7, 2026

    • repronim.org

      Public
      WiP for a replacement website
      HTML
      •
      MIT License
      •9•0•26•3•Updated May 5, 2026May 5, 2026

    • hbcd-loris2reproschema

      Public
      HBCD LORIS format to ReproSchema format
      Python
      •
      MIT License
      •1•0•0•40•Updated May 4, 2026May 4, 2026

    • babs-demo-ohbm2025

      Public
      A demo for OHBM 2025 educational course on BABS
      Python
      •
      MIT License
      •1•3•0•0•Updated May 3, 2026May 3, 2026

    • neurodocker

      Public
      Generate custom Docker and Singularity images, and minimize existing containers
      linuxdockerscience
      linuxdockersciencedockerfilereproducible-researchcontainersneurosciencesingularity-containernipypeapptainer
      Python
      •
      Apache License 2.0
      •99•357•7•4•Updated May 1, 2026May 1, 2026

    • reprostim

      Public
      Automated capture of audio-visual stimuli into BIDS datasets
      reproducible-researchpsychologyneuroimaging
      reproducible-researchpsychologyneuroimaging
      Python
      •4•8•52•1•Updated Apr 28, 2026Apr 28, 2026

    • reproschema-py

      Public
      Python
      •
      Apache License 2.0
      •10•2•15•5•Updated Apr 27, 2026Apr 27, 2026

    • ReproInventory

      Public
      A repo for developing the ReproNim inventory of training resources.
      TypeScript
      •
      MIT License
      •7•6•6•2•Updated Apr 23, 2026Apr 23, 2026

    • reproman

      Public
      ReproMan (AKA NICEMAN, AKA ReproNim TRD3)
      Python
      •
      Other
      •14•24•158•6•Updated Apr 16, 2026Apr 16, 2026

    • ds000003-demo-fastsurfer

      Public
      Doing YODA style demo from https://github.com/ReproNim/containers?tab=readme-ov-file#a-typical-yoda-workflow but using fastsurfer from NeuroDesktop collection
      containersneuroimagingreproducibility
      containersneuroimagingreproducibilityreexecutable-publicationdataladfastsurfer
      0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • reproschema

      Public
      A standardized form generation and data collection schema to harmonize results by design across projects.
      schemainteroperabilitystandardizing-assessments
      schemainteroperabilitystandardizing-assessmentsclinical-assessments
      Python
      •
      Other
      •24•18•16•9•Updated Mar 6, 2026Mar 6, 2026

    • simple2_bidsapp_babs

      Public
      test freesurfer_bidsapp with babs
      Shell
      •
      MIT License
      •2•0•2•0•Updated Mar 5, 2026Mar 5, 2026

    • freesurfer-nidm_bidsapp

      Public
      A BIDS App implementation for FreeSurfer that provides standardized surface reconstruction and morphometric analysis with NIDM output.
      Python
      •
      MIT License
      •4•0•1•0•Updated Mar 4, 2026Mar 4, 2026

    • ants-nidm_bidsapp

      Public
      A BIDS App for ANTs-based brain segmentation with NIDM outputs.
      Python
      •
      MIT License
      •2•0•0•1•Updated Mar 4, 2026Mar 4, 2026

    • skills

      Public
      skills for repronim tools
      MIT License
      •0•0•1•0•Updated Mar 4, 2026Mar 4, 2026

    • ABCD-ReproSchema

      Public
      The ReproSchema version of ABCD assessments.
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

    • HBCD-ReproSchema

      Public
      The ReproSchema version of HBCD assessments.
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

    • ReproTube

      Public
      Collection (git-annex/DataLad dataset) of educational videos
      Shell
      •0•1•6•0•Updated Feb 12, 2026Feb 12, 2026

    • ABCD-visidata

      Public
      Navigate ABCD data with visidata
      Python
      •0•1•0•0•Updated Jan 23, 2026Jan 23, 2026

    • reprobraise

      Public
      Reproducible BRAIn State Extraction (ReproBRAISE)
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • SumarizeFmriprep

      Public
      A script to generate a session summary from a fmriprep* (fmriprep-babies, nibabies, fmriprep, etc.) analysis
      Shell
      •
      MIT License
      •1•1•4•0•Updated Jan 16, 2026Jan 16, 2026

    • qr_decode_bm

      Public
      Benchmarking potential solutions for faster QR decoding
      Python
      •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • mriqc-nidm_bidsapp

      Public
      A BIDS App that runs MRIQC quality control on neuroimaging data and converts the outputs to NIDM (Neuroimaging Data Model) format for improved interoperability …
      Python
      •
      MIT License
      •2•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • ants_seg_to_nidm

      Public
      ANTS-based structural segmentation exporter to NIDM
      Python
      •
      MIT License
      •3•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • segstats_jsonld

      Public
      Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
      brainweb
      brainweb
      Python
      •
      MIT License
      •8•1•9•2•Updated Nov 30, 2025Nov 30, 2025

    • stuff2NIDM

      Public
      Repo for the process of adding "stuff" (ie the results of fmriprep, etc. processing) to the NIDM graph.
      Python
      •
      MIT License
      •2•1•1•1•Updated Nov 18, 2025Nov 18, 2025

    • reproschema-protocol-cookiecutter

      Public
      A cookiecutter for reproschema protocols.
      Python
      •1•0•1•1•Updated Sep 20, 2025Sep 20, 2025

    • FAIR_neuroimaging_with_NIDM

      Public
      FAIR neuroimaging with the Neuroimaging Data Model and PyNIDM
      Shell
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • reproschema-ui

      Public
      UI to render ReproSchema based protocols and assessments.
      hacktoberfestjsonldform-ui
      hacktoberfestjsonldform-ui
      Vue
      •
      Other
      •20•3•46•3•Updated Aug 25, 2025Aug 25, 2025

    • simple2_NIDM_examples

      Public
      ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad
      Shell
      •15•3•2•3•Updated Aug 14, 2025Aug 14, 2025
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