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    28 repositories

    • playbase

      Public
      Core back-end functionality and logic for OmicsPlayground
      R
      •
      Other
      •0•4•3•5•Updated Apr 24, 2026Apr 24, 2026

    • omicsplayground

      Public
      Visual self-service analytics platform for big omics data.
      rna-seqgenomicsomics
      rna-seqgenomicsomicsrna-seq-analysisgenomics-visualization
      R
      •
      Other
      •37•130•13•7•Updated Apr 24, 2026Apr 24, 2026

    • plaid

      Public
      Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data
      bioinformaticsrna-seq-analysisenrichment-analysis
      bioinformaticsrna-seq-analysisenrichment-analysisomics-data
      R
      •
      GNU General Public License v3.0
      •1•23•2•0•Updated Apr 19, 2026Apr 19, 2026

    • WGCNAplus

      Public
      R
      •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • metaLINCS

      Public
      R
      •
      GNU General Public License v3.0
      •1•7•0•0•Updated Mar 2, 2026Mar 2, 2026

    • plotly.repel

      Public
      R package for repelling overlapping text labels for plotly
      R
      •
      Other
      •0•1•1•0•Updated Mar 2, 2026Mar 2, 2026

    • lasagna

      Public
      Multi-Layer Graph Analysis (LASAGNA) for Multi-Omics Data
      R
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • visNetwork

      Public
      R package, using vis.js library for network visualization
      JavaScript
      •
      Other
      •128•0•0•0•Updated Feb 20, 2026Feb 20, 2026

    • ultragsea

      Public
      Ultragsea computes preranked gene set enrichment much like fGSEA but is 100 times faster
      bioinformaticsrna-seqenrichment-analysis
      bioinformaticsrna-seqenrichment-analysisomics-data
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 25, 2025Dec 25, 2025

    • playdata

      Public
      Internal datasets needed for playbase
      R
      •0•1•2•1•Updated Nov 14, 2025Nov 14, 2025

    • bigdash

      Public
      R
      •
      Other
      •0•4•0•0•Updated Nov 12, 2025Nov 12, 2025

    • omicsplayground-doc

      Public
      Python
      •3•2•0•0•Updated Nov 3, 2025Nov 3, 2025

    • NPM

      Public
      Latent Batch Effect Correction of Omics data by Nearest-Pair Matching
      R
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Sep 9, 2025Sep 9, 2025

    • wizardR

      Public
      R/Shiny Multi-Step Wizard
      R
      •
      MIT License
      •2•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • PCSF

      Public
      HTML
      •
      MIT License
      •11•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • biomaRt

      Public
      R package providing query functionality to BioMart instances like Ensembl
      R
      •18•0•0•0•Updated Apr 18, 2024Apr 18, 2024

    • fgsea

      Public
      Fast Gene Set Enrichment Analysis
      R
      •
      Other
      •71•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • EuroBioC2023

      Public
      EuroBioC2023
      Makefile
      •0•0•0•0•Updated Sep 22, 2023Sep 22, 2023

    • shinyCAPTCHA

      Public
      Shiny module for google reCAPTCHA V2
      R
      •
      Other
      •3•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • shinyChatR

      Public
      shiny module chat
      R
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Jul 17, 2023Jul 17, 2023

    • azimuth

      Public
      A Shiny web app for mapping datasets using Seurat v4
      R
      •
      GNU General Public License v3.0
      •44•0•0•0•Updated Jun 19, 2023Jun 19, 2023

    • bigLoaders

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

    • archs4

      Public
      An R interface to query and extract data from the ARCHS4 data
      R
      •1•0•0•0•Updated Mar 8, 2023Mar 8, 2023

    • docs

      Public
      Ruby
      •
      MIT License
      •0•0•0•0•Updated Jan 10, 2023Jan 10, 2023

    • shiny-plotly-editor

      Public
      HTML
      •3•0•0•0•Updated Oct 9, 2022Oct 9, 2022

    • shiny-timer

      Public
      R
      •0•0•0•0•Updated Sep 24, 2022Sep 24, 2022

    • README-template.md

      Public
      A README template for anyone to copy and use.
      594•1•0•0•Updated Oct 12, 2021Oct 12, 2021

    • bigomics.github.io

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated May 21, 2019May 21, 2019
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