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    25 repositories

    • yeat

      Public
      YEAT: Your Everyday Assembly Tool
      Python
      •
      Other
      •1•1•21•2•Updated Apr 24, 2026Apr 24, 2026

    • mixder

      Public
      Mixture deconvolution workflow for Kintelligence SNPs
      R
      •
      Other
      •1•1•2•2•Updated Apr 24, 2026Apr 24, 2026

    • pLannotate

      Public
      Webserver and command line tool for annotating engineered plasmids
      Python
      •
      GNU General Public License v3.0
      •31•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • lusSTR

      Public
      Tool to convert ForenSeq sequence strings to various annotation types for downstream analyses
      Python
      •
      Other
      •0•6•1•3•Updated Apr 8, 2026Apr 8, 2026

    • ezfastq

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Apr 6, 2026Apr 6, 2026

    • pytaxonkit

      Public
      Python bindings for the TaxonKit library
      pythonbioinformaticstaxonomy
      pythonbioinformaticstaxonomyhacktoberfest
      Python
      •
      Other
      •6•43•0•0•Updated Apr 6, 2026Apr 6, 2026

    • rsidx

      Public
      Library for indexing VCF files for random access searches by rsID
      searchbioinformaticsgenomics
      searchbioinformaticsgenomicsvariant-annotation
      Python
      •
      Other
      •4•17•1•0•Updated Mar 2, 2026Mar 2, 2026

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.9k•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • MicroHapDB

      Public
      Portable database of microhaplotype marker and allele frequency data
      bioinformaticsngsforensics
      bioinformaticsngsforensicshacktoberfestmicrohaplotypes
      Python
      •
      Other
      •4•11•1•0•Updated Oct 2, 2025Oct 2, 2025

    • alpine-pixi

      Public
      Dockerfile
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • manylinux2014-rust

      Public
      Dockerfile
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • MicroHapulator

      Public
      Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
      bioinformaticsngsforensics
      bioinformaticsngsforensicshacktoberfestmicrohaplotypes
      Python
      •
      Other
      •1•8•6•0•Updated Jun 16, 2025Jun 16, 2025

    • mhrs

      Public
      Rust
      •0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • claspy

      Public
      Cell line authentication with STRs in Python
      Python
      •
      Other
      •0•1•2•0•Updated Jun 28, 2024Jun 28, 2024

    • snakemake-wrappers

      Public
      This is the development home of the Snakemake wrapper repository, see
      Perl
      •212•0•0•0•Updated Oct 21, 2020Oct 21, 2020

    • asm_tools

      Public
      Assembly utility scripts used to assemble bacterial isolates sequenced on Illumina paired-end sequencers
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 15, 2020Aug 15, 2020

    • CMash

      Public
      Fast and accurate set similarity estimation via containment min hash
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Apr 7, 2020Apr 7, 2020

    • docker-centos7-conda

      Public
      Dockerfile
      •0•0•0•0•Updated Mar 20, 2020Mar 20, 2020

    • kmer-cnt

      Public
      Code examples of fast and simple k-mer counters for tutorial purposes
      C++
      •
      MIT License
      •17•0•0•0•Updated Mar 10, 2020Mar 10, 2020

    • prokka

      Public
      :zap: :aquarius: Rapid prokaryotic genome annotation
      Perl
      •235•0•0•0•Updated Aug 15, 2019Aug 15, 2019

    • happer

      Public
      Python
      •
      Other
      •0•0•0•0•Updated May 2, 2019May 2, 2019

    • MicroGenie

      Public archive
      Python
      •0•0•0•0•Updated Apr 5, 2019Apr 5, 2019

    • FONTANA

      Public
      A working pipeline created to analyze microhaplotypes from forensic samples.
      Python
      •2•0•0•0•Updated Nov 15, 2018Nov 15, 2018

    • blast-validate

      Public
      BLAST-based validation of metagenomic sequence assignments
      Perl
      •4•7•0•0•Updated Jun 7, 2018Jun 7, 2018

    • MetaValidate

      Public
      metagenomics assembly validation
      0•0•0•0•Updated Sep 14, 2017Sep 14, 2017
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