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    56 repositories

    • spatial

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 24, 2023May 24, 2023

    • G606_Phylogenetics

      Public
      For Gen606 Phylogenetics lesson
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated May 3, 2023May 3, 2023

    • DoveParentsRNAseq

      Public
      Characterizing the neurogenomics of parental care in the rock dove
      R
      •1•5•6•0•Updated Dec 29, 2021Dec 29, 2021

    • Oyster_River_Protocol

      Public
      Official Repository of the Oyster River Protocol for Transcriptome Assembly
      genomicsassemblyrnaseq
      genomicsassemblyrnaseqtranscriptome-assemblyoyster-river-protocol
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •15•18•23•4•Updated Aug 12, 2021Aug 12, 2021

    • orp_website

      Public
      Website for Oyster River Protocol
      Creative Commons Zero v1.0 Universal
      •1•3•0•0•Updated Apr 22, 2021Apr 22, 2021

    • driftR

      Public
      population genetic simulations with R and Shiny
      R
      •11•0•0•0•Updated Nov 17, 2020Nov 17, 2020

    • dnazoo_annotation

      Public
      This is the code to reproduce the DNAzoo genome annotations.
      Shell
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Jul 7, 2020Jul 7, 2020

    • pecr_genome

      Public
      Files used for pecr genome
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 27, 2020May 27, 2020

    • HackMD

      Public
      HackMD notes
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Mar 26, 2020Mar 26, 2020

    • OrthoFinder

      Public
      Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous …
      Python
      •
      GNU General Public License v3.0
      •201•1•0•0•Updated Jan 7, 2020Jan 7, 2020

    • EMBL_Workshop

      Public
      Materials for the EMBL-EBI workshop
      0•1•0•0•Updated Oct 4, 2019Oct 4, 2019

    • museum_genomics

      Public
      This is the repo for the Museum Genomics Paper
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 25, 2019Jul 25, 2019

    • MCBS913_2019

      Public
      This is the repo for the Spring 2019 version of MCBS913
      machine-learningbioinformaticsgenomics
      machine-learningbioinformaticsgenomicsmetagenomicsalignmentminhash
      Python
      •
      The Unlicense
      •1•1•0•0•Updated May 22, 2019May 22, 2019

    • phylotator

      Public
      Phylotator is software for using ideas from phylogenetics to annotate transcripts
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2019Apr 23, 2019

    • Dockerfiles

      Public
      docker files
      Mozilla Public License 2.0
      •0•0•0•0•Updated Mar 27, 2019Mar 27, 2019

    • nhen

      Public
      Nhen's stuff
      researchundergrad
      researchundergrad
      Python
      •0•0•0•0•Updated Mar 22, 2019Mar 22, 2019

    • RockDove

      Public
      NSF Funded Project with Rebecca Calisi
      Creative Commons Zero v1.0 Universal
      •2•0•0•0•Updated Mar 13, 2019Mar 13, 2019

    • XSEDE18

      Public
      2018 Xsede application
      TeX
      •0•0•0•0•Updated Apr 12, 2018Apr 12, 2018

    • Umea_Workshop

      Public
      Materials for the Umea Workshop
      Mozilla Public License 2.0
      •0•0•0•0•Updated Mar 14, 2018Mar 14, 2018

    • Shannon

      Public
      RNA-Seq
      Python
      •10•0•0•0•Updated Mar 9, 2018Mar 9, 2018

    • kmers_as_metrics

      Public
      Can you use kmers to evaluate transcriptiome assemblies
      MIT License
      •0•0•0•0•Updated Mar 1, 2018Mar 1, 2018

    • transrate

      Public
      Understand your transcriptome assembly
      Ruby
      •
      Other
      •33•0•0•0•Updated Aug 8, 2017Aug 8, 2017

    • testesDGE

      Public
      files for Laurens DGE paper
      MIT License
      •0•1•1•0•Updated May 16, 2017May 16, 2017

    • Lauren

      Public
      0•0•0•0•Updated May 16, 2017May 16, 2017

    • peer_rnaseq

      Public
      PEER RNA seq manuscript
      MIT License
      •0•1•0•0•Updated Mar 22, 2017Mar 22, 2017

    • general

      Public
      general code
      Shell
      •
      MIT License
      •4•2•0•3•Updated Oct 18, 2016Oct 18, 2016

    • sequencetools

      Public
      Set of scripts etc. to work with DNA sequence and related files
      Perl
      •
      The Unlicense
      •7•0•0•0•Updated Sep 7, 2016Sep 7, 2016

    • tuco_manuscript

      Public
      AL Tuco Manuscript Code
      MIT License
      •1•0•0•0•Updated Aug 26, 2016Aug 26, 2016

    • peer_reproductive-transcriptome

      Public
      for manuscript
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Aug 23, 2016Aug 23, 2016

    • Gen711

      Public
      3•12•1•0•Updated Aug 16, 2016Aug 16, 2016
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