This repository encapsulates all code required to reproduce the results of the paper "Codon language embeddings provide strong signals for use in protein engineering", by Carlos Outeiral and Charlotte M. Deane.
If you use our work, please cite:
Outeiral, Carlos, and Charlotte M. Deane. Codon language embeddings provide strong signals for use in protein engineering Nature Machine Intelligence 6.2 (2024): 170-179.
git clone https://github.com/oxpig/CaLM
python setup.py installfrom calm import CaLM
model = CaLM()
model.embed_sequence('ATGGTATAGAGGCATTGA')