# Tutorial data for Currrent Protocols

it contains folders for 4 protocols

basic_protocol1
containing these files:
README                     #discusses the content of the directory
basic_protocol1.sh         #recreates the tutorial 
basic_protocol1_mpi.sh     #recreates the tutorial using parallel migrate
example_results            #results used to write the paper
infile                     #main data file
parmfile_default           #option file parameters with default options 
parmfile_short             #10x shorter than default
parmfile_tooshort          #100x shorter than the default


basic_protocol2
containing these files:
README                     #discusses the content of the directory
basic_protocol2.sh         #recreates the tutorial
basic_protocol2b.sh        #same as above but using default parameters
basic_protocol2_mpi.sh     #recreates the tutorial using parallel migrate
basic_protocol2_mpib.sh    #same as above but using default parameters
bf.py                      #script to calculate model probabiities    
example_results_default    #results using defaults used to write this paper 
example_results_short      # results used to write this paper

basic_protocol3
contains these files:
README                     #discusses content of directory
basic_protocol3.sh         #script to recreate the basic tutorial 3


advanced__protocol
[in the published paper this is labeled basic_protocol4]
contains these files:
README                     #iscusses content of directory
advanced_protocol.sh       #recreates content
bf.py                      #script to calculate model probabilities
comparison                 #directory containing the files used in the paper