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127 changes: 127 additions & 0 deletions TODO-NYU-migration.md
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# Duke → NYU migration to-do list

Every Duke-specific reference on the site, grouped so you can decide what to
change and when. Items are `file:line` and clickable in most editors.

**What's already done in this branch** (visual rebrand):

- Color scheme swapped from Duke Blue `#001A57` → NYU Violet `#57068C`
(navbar, buttons, jumbotron), with Deep Violet `#330662` accents.
- Navbar painted NYU Violet.
- Header banner (jumbotron) chapel photo → NYU violet gradient.
- Duke Neurobiology logo → placeholder NYU CNS lockup (`images/nyu_cns_lockup.svg`).
- Bold "We're moving to NYU (Sept 1, 2026)" announcement on the landing page.

Everything below still needs a human decision (timing, facts, or per-person
choices), so it's left for you.

---

## 1. Site identity & metadata *(decide when to flip — you're still at Duke until Sept 1)*

- [ ] `_config.yml:1` — title: `"Pearson Lab at Duke University"` → NYU
- [ ] `_config.yml:3` — description: "Computational neuroscience at Duke University…" → NYU
- [ ] `index.html:4` — desc: "The online home of the Pearson Lab at Duke University" → NYU
- [ ] **Get the official NYU / CNS lockup.** The current logo is a typographic
placeholder. Official NYU wordmark/seal is trademarked and can't be
hotlinked — request an approved asset from **brand@nyu.edu** or CNS /
Arts & Science communications, then replace `images/nyu_cns_lockup.svg`.

## 2. People & contact info — `_data/people.yml`

Emails: decide per person who is moving; update the movers to `@nyu.edu`.

- [ ] `:38` John — `john.pearson@duke.edu`
- [ ] `:61` Ganchao Wei — `ganchao.wei@duke.edu`
- [ ] `:101` Trevor Alston — `trevor.alston@duke.edu`
- [ ] `:116` David St-Amand — `david.st-amand@duke.edu`
- [ ] `:129` Shiyang Pan — `shiyang.pan@duke.edu`
- [ ] `:143` Caitlin Lewis — `caitlin.lewis@duke.edu`
- [ ] `:209` Miles Martinez — `miles.martinez@duke.edu`
- [ ] `:227` Ziyi Gong — `ziyi.gong@duke.edu`

Bios (update present-tense affiliations; past training at Duke is historical and can stay):

- [ ] `:44–46` John's bio — Duke postdoc / DIBS / current appointments. Add the
NYU Center for Neural Science appointment.
- [ ] `:77` "joint with Warren Grill" links to `bme.duke.edu` — update if the
joint appointment changes at NYU.
- [ ] `:104` Trevor — "sixth-year Neurobiology graduate student at Duke"
- [ ] `:113` David — headshot hosted on `scholars.duke.edu` (may break if the
Duke Scholars profile is removed; consider self-hosting the image).
- [ ] `:133` Shiyang — "at Duke"
- [ ] `:147` Caitlin — "…Engineering at Duke"
- [ ] `:213` Miles — "entered Duke through the CNAP program"

Alumni outcomes — historical, **likely keep as-is**:

- `:251` "Duke Computer Science (PhD program)", `:303` "Duke Medical School",
`:321` Duke Hart Leadership Fellow.

## 3. Recruiting / how to join — `join_us.md` *(biggest rewrite)*

The entire PhD-pathways section is Duke-specific and needs rewriting for NYU
(e.g. CNS PhD program, and whichever cross-listed programs apply):

- [ ] `:14` intro paragraph ("Duke provides a wonderful environment…")
- [ ] `:16` Neurobiology (neuro.duke.edu) — → NYU CNS
- [ ] `:18` Cognitive Neuroscience Admitting Program (CNAP / DIBS / CCN)
- [ ] `:20` Biostatistics & Bioinformatics (biostat.duke.edu)
- [ ] `:22` Psychology & Neuroscience (psychandneuro.duke.edu)
- [ ] `:24` Electrical & Computer Engineering (ece.duke.edu)
- [ ] `:46` undergraduate research (undergraduateresearch.duke.edu)
- [ ] `:58–60` minors / high-school policy — references Duke rules & DUNE program

## 4. Location — `location.md` + `images/location/`

Entirely about the Bryan Research Building at Duke → Meyer Building,
**4 Washington Place, New York, NY 10003** (CNS is in Meyer, room ~621).

- [ ] `:7` Bryan Research Building + `maps.duke.edu` link
- [ ] `:9,:13,:17,:21` all four location photos are Duke buildings
(`images/location/bryan_ext.jpg`, `bryan_ent.jpg`, `admin_ent.jpg`,
`ctn_ent.jpg`) — replace with NYU/Meyer photos
- [ ] Rewrite the walking directions (breezeway, Center for Theoretical
Neurobiology, etc.) for the new building.

## 5. Learning resources — `learning.md` *(low priority; generalize or update)*

- [ ] `:62` "the intro Bayesian class at Duke"
- [ ] `:64` Cliburn Chan's STA 663 (a Duke course)
- [ ] `:73` "Duke uses this for its intro ML class"

## 6. Research collaborators — `_data/research.yml` *(accurate external links; review)*

Duke collaborator lab links — keep if the collaborations continue, update/remove
if they don't:

- `:26,:28` Eva Naumann lab · `:50,:52` Richard Mooney lab · `:59,:63` Greg Field lab
(all `neuro.duke.edu`).

## 7. Blog posts — `_posts/` *(historical news — review, most likely KEEP)*

These accurately describe past events at Duke and normally shouldn't be
rewritten. Only revisit if a link rots or you want to note the affiliation
change. Duke references appear in:
`2015-11-06-news_pearson_profile.md`, `2015-11-13-big-data-nih.md`,
`2015-12-19-pnas_paper.md`, `2016-01-01-new_commentary_pnas.md`,
`2016-3-10-nasher_eye_tracking.md`, `2016-4-6-opencv-videos.md`,
`2016-4-8-in-the-news.md`, `2016-9-9-time-allocation-in-neuro.md`,
`2017-1-14-aws-grant.md`, `2017-3-31-modeling-other-minds.md`,
`2017-4-18-job-ad.md` (has `john dot pearson at duke dot edu`),
`2018-9-12-artificial-agents-social-decisions.md`,
`2018-10-30-high-throughput-legal-decisions.md`,
`2018-12-5-incubator-award.md`, `2019-1-16-poster-award.md`,
`2019-10-29-vae-preprint.md`, `2020-08-20-grad-school.md`,
`2015-11-06-eye_tracking_tech.md`, `2015-11-06-announcing_plab.md`.
Several also hotlink `people.duke.edu/~jmp33` / `~sni` assets that may
eventually disappear — consider self-hosting those images.

## 8. Housekeeping / leftover assets

- [ ] `images/chapel_gradient.jpg` — no longer referenced (jumbotron is now a
gradient). Delete once you're happy with the new header.
- [ ] `images/DUSOM_Dept_Neurobio_stack.jpg` — old Duke Neurobiology logo, now
unused. Delete after confirming the new lockup.
- [ ] `.image-size-overrides` / `.html5validator.yaml` / `lychee.toml` — check
these don't still whitelist the removed images or dead Duke links.
18 changes: 17 additions & 1 deletion _layouts/home.html
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,23 @@
window frame. -->
<div style="position: fixed; top: 80px; right: 80px; bottom: 80px; left: 80px; z-index: -1; background: url('/images/plab_logo_dark.svg') no-repeat center center; background-size: contain;"></div>
{% include navbar.html %}
<img src="/images/DUSOM_Dept_Neurobio_stack.jpg" alt="Duke School of Medicine, Department of Neurobiology" style="width: 25%; float: right; padding-top: 50px"/>
<img src="/images/nyu_cns_lockup.svg" alt="NYU Center for Neural Science" style="width: 22%; float: right; padding: 70px 40px 0 0"/>

<!-- ===================================================================
MOVING ANNOUNCEMENT (stub — edit the copy below as needed).
Bold, large-font banner announcing the lab's move to NYU. Remove
this whole block once the move is complete (after 2026-09-01).
=================================================================== -->
<div class="move-banner" role="status">
<div class="move-banner-inner">
<span class="move-banner-kicker">We're moving</span>
<p class="move-banner-headline">
The Pearson Lab is joining the <b>Center for Neural Science at NYU</b>
</p>
<p class="move-banner-date">Effective September&nbsp;1,&nbsp;2026</p>
</div>
</div>

<footer>
<div style="display: block; position: fixed; bottom: 20px; left: 30px">
<h3 style="color: #9d9d9d">{{ page.desc }}</h3>
Expand Down
84 changes: 73 additions & 11 deletions css/custom.css
Original file line number Diff line number Diff line change
Expand Up @@ -33,36 +33,47 @@ figcaption {

/* Page header banner. .jumbotron isn't a Bootstrap 5 class (removed in
the 4.x → 5.x cycle), but we keep the name as a custom selector.
The chapel image lives on the jumbotron itself so it scrolls away
with the header rather than staying fixed behind page content. */
NYU rebrand: a violet gradient in NYU Violet (#57068C) → Deep Violet
(#330662) replaces the old Duke chapel photo. Swap in an approved
NYU/Washington Square image here if/when one is available. */
.jumbotron {
height: 250px;
margin-bottom: 2rem;
color: white;
text-shadow: #444 0 1px 1px;
background: url('/images/chapel_gradient.jpg') no-repeat center center;
text-shadow: #222 0 1px 2px;
background: linear-gradient(135deg, #57068C 0%, #330662 100%);
background-size: cover;
}

/* NYU brand palette (from NYU brand guidelines):
NYU Violet #57068C (primary)
Deep Violet #330662 (dark accent / hover)
Ultra Violet #8900E1 (electrified accent, use sparingly) */
.navbar {
border-color: #001A57;
border-color: #330662;
}

/* Paint the top nav NYU Violet. White nav text sits at ~11.6:1 contrast
on this violet, so it's well within accessibility limits. */
.navbar.bg-dark {
background-color: #57068C !important;
}

.btn-primary {
background-color: #001A57;
border-color: #001A57;
background-color: #57068C;
border-color: #57068C;
opacity: 0.5;
}

.btn-primary:hover {
background-color: #001A57;
border-color: #001A57;
background-color: #57068C;
border-color: #57068C;
opacity: 1.0;
}

.btn-primary:active:focus {
background-color: #001A57;
border-color: #001A57;
background-color: #330662;
border-color: #330662;
opacity: 1.0;
-webkit-box-shadow: 0 0 5px black;
box-shadow: 0 0 5px black;
Expand All @@ -73,6 +84,57 @@ footer {
padding-bottom: 5px;
}

/* ---------------------------------------------------------------------
Moving announcement banner (landing page). Bold, large-font notice
that the lab is relocating to NYU. Styled in the NYU violet palette.
Safe to delete this block (and the matching markup in _layouts/home.html)
once the move is complete.
--------------------------------------------------------------------- */
.move-banner {
max-width: 760px;
margin: 60px auto 0;
padding: 0 20px;
text-align: center;
}

.move-banner-inner {
border: 3px solid #57068C;
border-radius: 14px;
padding: 28px 32px;
background: rgba(255, 255, 255, 0.92);
box-shadow: 0 8px 28px rgba(51, 6, 98, 0.18);
}

.move-banner-kicker {
display: inline-block;
text-transform: uppercase;
letter-spacing: 3px;
font-weight: 700;
font-size: 15px;
color: #fff;
background: #57068C;
padding: 5px 16px;
border-radius: 999px;
margin-bottom: 16px;
}

.move-banner-headline {
font-size: clamp(28px, 5vw, 46px);
font-weight: 800;
line-height: 1.15;
color: #330662;
margin: 0 0 12px;
}

.move-banner-headline b { color: #57068C; }

.move-banner-date {
font-size: clamp(18px, 2.5vw, 24px);
font-weight: 600;
color: #6D6D6D;
margin: 0;
}

/* Social icon buttons used on the people page. Each link wraps either
a FontAwesome <i> glyph or an inline SVG; both render at 34x34 with
a brand background. Replaces the old bootstrap-social.css plugin. */
Expand Down
1 change: 1 addition & 0 deletions images/nyu_cns_lockup.svg
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