fix(ci): repair crates.io package verification

Cargo.toml

@@ -10,7 +10,7 @@ homepage = "https://github.com/rabii-chaarani/codebaseGraph"
 readme = "README.md"
 keywords = ["codebase", "graph", "mcp", "cli", "analysis"]
 categories = ["command-line-utilities", "development-tools"]
-exclude = ["assets/ladybug-extensions/0.17.0/win_amd64/**"]
+exclude = ["assets/ladybug-extensions/0.18.1/win_amd64/**"]
 
 [workspace]
 members = [".", "crates/k-wiki", "crates/xtask"]
@@ -24,7 +24,7 @@ bundled-windows-extensions = []
 
 [dependencies]
 fs2 = "0.4.3"
-lbug = "0.17.1"
+lbug = "0.18.3"
 notify = "8.2"
 serde = { version = "1", features = ["derive"] }
 serde_json = "1"

build.rs

@@ -24,4 +24,37 @@ fn main() {
             println!("cargo:rustc-link-search=native={}", path.display());
         }
     }
+
+    if std::env::var("CARGO_CFG_TARGET_OS").as_deref() == Ok("macos")
+        && std::env::var("CARGO_CFG_TARGET_ARCH").as_deref() == Ok("x86_64")
+    {
+        link_macos_x86_compiler_runtime();
+    }
+}
+
+fn link_macos_x86_compiler_runtime() {
+    println!("cargo:rerun-if-env-changed=DEVELOPER_DIR");
+    let output = std::process::Command::new("xcrun")
+        .args(["clang", "--print-resource-dir"])
+        .output()
+        .expect("macOS x86_64 builds require xcrun and clang");
+    assert!(
+        output.status.success(),
+        "xcrun clang --print-resource-dir failed with {}",
+        output.status
+    );
+
+    let resource_dir =
+        String::from_utf8(output.stdout).expect("clang resource directory must be valid UTF-8");
+    let library_dir = std::path::Path::new(resource_dir.trim())
+        .join("lib")
+        .join("darwin");
+    let runtime = library_dir.join("libclang_rt.osx.a");
+    assert!(
+        runtime.is_file(),
+        "macOS compiler runtime not found at {}",
+        runtime.display()
+    );
+    println!("cargo:rustc-link-search=native={}", library_dir.display());
+    println!("cargo:rustc-link-lib=static=clang_rt.osx");
 }

knowledge/memory/procedural/ladybug-0183-link-and-extension-alignment-2026-08-14.md

@@ -0,0 +1,49 @@
+---
+agent_memory:
+  version: 1
+  kind: procedural
+  scope: repository
+  status: active
+  owner: codex
+  created_at: 2026-08-14T15:05:00+09:30
+  last_verified_at: 2026-08-14T15:06:00+09:30
+  verified_by: codex
+  review_after: null
+  supersedes:
+  - ladybug-release-extension-cache-variants-2026-08-13
+  superseded_by: null
+  sources:
+  - kind: ci-log
+    reference: GitHub Actions run 31770156177 job 94674205658
+    content_hash: null
+  - kind: source
+    reference: Cargo.toml and Cargo.lock pin lbug 0.18.3
+    content_hash: null
+  - kind: source
+    reference: lbug 0.18.3 build.rs removes bundled component relinking and bundled CMakeLists.txt declares LBUG_EXTENSION_VERSION=0.18.1
+    content_hash: null
+  - kind: test
+    reference: db_writer::extensions::tests::supports_prebuilt_and_source_built_ladybug_extension_cache_versions
+    content_hash: null
+  - kind: test
+    reference: db_writer::tests::native_writer_loads_json_staging_through_ladybug_copy and adapters::cli::tests::graph::graph_search_reads_native_fts_indexes
+    content_hash: null
+  history:
+  - from: candidate
+    to: active
+    actor: codex
+    at: 2026-08-14T15:06:00+09:30
+    reason: Verified against the failing CI linker command, the lbug 0.17.1 and 0.18.3 build scripts, the 0.18.3 bundled CMake extension version, official 0.18.1 extension binaries, a successful crates.io dry-run, and passing JSON/FTS runtime tests.
+description: lbug 0.18.3 fixes the 0.17.1 source-link fallback but requires matching 0.18.1 extension binaries and cache paths.
+tags:
+- ci
+- crates-io
+- extensions
+- ladybug
+- linker
+- release
+timestamp: 2026-08-14T15:05:00+09:30
+title: Align Ladybug source linking and extension ABI when upgrading lbug
+type: agent-memory
+---
+When `cargo publish --dry-run` verifies the crates.io tarball without an external `LBUG_LIBRARY_DIR`, `lbug 0.17.1` can fall back to a source build that whole-archives both `liblbug.a` and its component archives, producing duplicate symbols. Upgrade to `lbug 0.18.3` or later with the source-link fix, and keep its native extension ABI aligned: the bundled Ladybug source in 0.18.3 declares `LBUG_EXTENSION_VERSION=0.18.1`, so vendored JSON/FTS binaries and the seeded `.lbdb/extension/0.18.1/<platform>` paths must come from the official 0.18.1 extension repository. Never copy older extension bytes into the new cache directory; JSON may appear to work while FTS fails at load time with unresolved C++ symbols. Verify both `cargo publish --dry-run --locked` and focused JSON/FTS runtime tests after the upgrade.

knowledge/memory/procedural/ladybug-macos-x86-compiler-runtime-2026-08-14.md

@@ -0,0 +1,42 @@
+---
+agent_memory:
+  version: 1
+  kind: procedural
+  scope: repository
+  status: active
+  owner: codex
+  created_at: 2026-08-14T15:42:00+09:30
+  last_verified_at: 2026-08-14T15:43:00+09:30
+  verified_by: codex
+  review_after: null
+  supersedes: []
+  superseded_by: null
+  sources:
+  - kind: ci-log
+    reference: GitHub Actions run 31773525988 job 94684123400, undefined ___cpu_model on macos-x86_64
+    content_hash: null
+  - kind: source
+    reference: build.rs link_macos_x86_compiler_runtime
+    content_hash: null
+  - kind: ci-log
+    reference: GitHub Actions run 31774057855, all native targets and required check successful
+    content_hash: null
+  history:
+  - from: candidate
+    to: active
+    actor: codex
+    at: 2026-08-14T15:43:00+09:30
+    reason: Verified against the failed macOS Intel linker command and the subsequent hosted CI run where macOS Intel, Linux, Apple Silicon, Windows, publish verification, and the required aggregate all succeeded.
+description: Ladybug's macOS x86 static archive needs LLVM's CPU-model runtime in Rust's nodefaultlibs final link.
+tags:
+- ci
+- ladybug
+- linker
+- macos
+- release
+- x86_64
+timestamp: 2026-08-14T15:42:00+09:30
+title: Link LLVM compiler runtime for Ladybug on macOS Intel
+type: agent-memory
+---
+When linking the prebuilt Ladybug 0.18.3 static archive for `x86_64-apple-darwin`, the archive can reference `__cpu_model`. Rust invokes the final C linker with `-nodefaultlibs`, so Clang does not automatically add the compiler runtime and the native artifact build fails with an undefined `___cpu_model` symbol. For macOS x86_64 only, resolve the active Clang resource directory through `xcrun clang --print-resource-dir`, add its `lib/darwin` directory to the native link search, and statically link `libclang_rt.osx.a`. Do not add this link to Linux, Apple Silicon, or Windows. Verify the repair with the hosted `macos-x86_64` native artifact build and smoke test, then confirm every other native matrix target remains green.

knowledge/memory/procedural/ladybug-release-extension-cache-variants-2026-08-13.md

@@ -3,14 +3,14 @@ agent_memory:
   version: 1
   kind: procedural
   scope: repository
-  status: active
+  status: superseded
   owner: codex
   created_at: 2026-08-13T00:00:00+09:30
   last_verified_at: 2026-08-13T00:00:00+09:30
   verified_by: codex
   review_after: null
   supersedes: []
-  superseded_by: null
+  superseded_by: ladybug-0183-link-and-extension-alignment-2026-08-14
   sources:
   - kind: commit
     reference: 'ba7ed2f fix(release): seed both Ladybug extension caches'
@@ -33,6 +33,11 @@ agent_memory:
     actor: codex
     at: 2026-08-13T00:00:00+09:30
     reason: Verified against the distinct 0.19.0 source-built and 0.17.0 prebuilt Ladybug cache requests in the failing logs, and the successful Ubuntu and Windows native-package smoke tests in run 31671399427.
+  - from: active
+    to: superseded
+    actor: codex
+    at: 2026-08-14T15:07:00+09:30
+    reason: The repository now uses lbug 0.18.3 consistently for source and prebuilt modes, so both require ABI-compatible 0.18.1 extension binaries instead of seeding 0.17.0 and 0.19.0 copies.
 description: Prebuilt and source-built Ladybug libraries can resolve the same bundled extensions from different cache-version paths.
 tags:
 - ci

src/db_writer/extensions.rs

@@ -1,11 +1,10 @@
 use crate::error::NativeError;
 use std::path::{Path, PathBuf};
 
-// Prebuilt Ladybug 0.17.x libraries look in the 0.17.0 cache, while the
-// source-built release library resolves the same extensions from 0.19.0.
-// Seed both compatible cache locations so packaged binaries never download
-// extensions at runtime.
-const LADYBUG_EXTENSION_CACHE_VERSIONS: [&str; 2] = ["0.17.0", "0.19.0"];
+// Both the prebuilt and source-built Ladybug 0.18.3 libraries resolve
+// extensions from this ABI-compatible cache path. Seed it so packaged
+// binaries never download extensions at runtime.
+const LADYBUG_EXTENSION_CACHE_VERSIONS: [&str; 1] = ["0.18.1"];
 
 pub fn preseed_ladybug_extensions(include_fts: bool) -> Result<(), NativeError> {
     let home = ladybug_home_dir()?;
@@ -73,10 +72,10 @@ fn ladybug_platform() -> Option<&'static str> {
 fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
     match extension {
         "json" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/linux_amd64/json/libjson.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/linux_amd64/json/libjson.lbug_extension"
         )),
         "fts" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/linux_amd64/fts/libfts.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/linux_amd64/fts/libfts.lbug_extension"
         )),
         _ => None,
     }
@@ -86,10 +85,10 @@ fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
 fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
     match extension {
         "json" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/linux_arm64/json/libjson.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/linux_arm64/json/libjson.lbug_extension"
         )),
         "fts" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/linux_arm64/fts/libfts.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/linux_arm64/fts/libfts.lbug_extension"
         )),
         _ => None,
     }
@@ -99,10 +98,10 @@ fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
 fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
     match extension {
         "json" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/osx_amd64/json/libjson.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/osx_amd64/json/libjson.lbug_extension"
         )),
         "fts" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/osx_amd64/fts/libfts.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/osx_amd64/fts/libfts.lbug_extension"
         )),
         _ => None,
     }
@@ -112,10 +111,10 @@ fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
 fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
     match extension {
         "json" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/osx_arm64/json/libjson.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/osx_arm64/json/libjson.lbug_extension"
         )),
         "fts" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/osx_arm64/fts/libfts.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/osx_arm64/fts/libfts.lbug_extension"
         )),
         _ => None,
     }
@@ -129,10 +128,10 @@ fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
 fn bundled_extension_bytes(extension: &str) -> Option<&'static [u8]> {
     match extension {
         "json" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/win_amd64/json/libjson.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/win_amd64/json/libjson.lbug_extension"
         )),
         "fts" => Some(include_bytes!(
-            "../../assets/ladybug-extensions/0.17.0/win_amd64/fts/libfts.lbug_extension"
+            "../../assets/ladybug-extensions/0.18.1/win_amd64/fts/libfts.lbug_extension"
         )),
         _ => None,
     }
@@ -160,17 +159,10 @@ mod tests {
 
     #[test]
     fn supports_prebuilt_and_source_built_ladybug_extension_cache_versions() {
+        assert_eq!(super::LADYBUG_EXTENSION_CACHE_VERSIONS, ["0.18.1"]);
         assert_eq!(
-            super::LADYBUG_EXTENSION_CACHE_VERSIONS,
-            ["0.17.0", "0.19.0"]
-        );
-        assert_eq!(
-            extension_dir(Path::new("cache"), "0.17.0", "win_amd64", "json"),
-            PathBuf::from("cache/.lbdb/extension/0.17.0/win_amd64/json")
-        );
-        assert_eq!(
-            extension_dir(Path::new("cache"), "0.19.0", "linux_amd64", "json"),
-            PathBuf::from("cache/.lbdb/extension/0.19.0/linux_amd64/json")
+            extension_dir(Path::new("cache"), "0.18.1", "osx_arm64", "json"),
+            PathBuf::from("cache/.lbdb/extension/0.18.1/osx_arm64/json")
         );
     }
 }