Navigation: Repo Home | Docs Hub | Setup | Reproduce | Pipeline Map | Data Products
This is the main navigation page for the repository documentation. Use it to move between the high-level overview, exact reproduction steps, technical workflow references, and the code that implements each workstream. The companion Data Products page also documents the minimal server-aligned directory skeleton that is now tracked with .gitkeep placeholders where needed.
| If you want to... | Go to... |
|---|---|
| Understand the repo at a glance | Repo Home |
| See the whole pipeline visually | Pipeline Map |
| Reproduce the active production pipelines | Reproduce |
| Find outputs and file locations | Data Products |
| Understand shared climate architecture | Architecture |
| Review QC and validation coverage | Testing and QC |
| Set up the environment | Setup |
| Use the main visual guide while working locally | Dashboard entrypoint |
- Shared architecture
- TerraClimate overview
- PRISM overview
- WorldClim overview
- Shared climate summary script
| Directory | What it covers | Overview | Technical workflow | Scripts |
|---|---|---|---|---|
01_ids/ |
IDS download, cleaning, spatial joins, area metrics | README | WORKFLOW | scripts/ |
02_terraclimate/ |
GEE-based TerraClimate extraction for IDS locations | README | WORKFLOW | scripts/ |
03_prism/ |
PRISM web-service extraction for CONUS IDS locations | README | WORKFLOW | scripts/ |
04_worldclim/ |
WorldClim local GeoTIFF extraction for IDS locations | README | WORKFLOW | scripts/ |
05_fia/ |
FIA plot summaries, disturbance, treatment, and site climate | README | WORKFLOW | scripts/ |
archive/05_era5/ |
Archived ERA5 extraction reference and directory layout | README | WORKFLOW | scripts/ |
| Page | Purpose |
|---|---|
| Reproduce | Exact production run order, grouped by workstream |
| Pipeline Map | GitHub-renderable diagram plus links to the dashboard and HTML companion |
| Data Products | Main outputs, tracked review files, local-only artifacts, and server-aligned directory paths |
| Architecture | Shared climate extraction concepts and data model |
| Testing and QC | Optional diagnostics, validation steps, and known QC gaps |
| Category | Location | Notes |
|---|---|---|
| Production | 01_ids/scripts/ | IDS production and QC scripts |
| Production | 02_terraclimate/scripts/ | TerraClimate production plus exploratory script |
| Production | 03_prism/scripts/ | PRISM production scripts |
| Production | 04_worldclim/scripts/ | WorldClim production scripts |
| Production | 05_fia/scripts/ | FIA production scripts |
| Shared | scripts/utils/ | Reusable helpers across workstreams |
| Shared | scripts/build_climate_summaries.R | Shared climate summary builder |
| Demo | scripts/demos/ | Example analyses using finished outputs |
| Archived | archive/05_era5/scripts/ | ERA5 reference implementation retained outside the active run path |
| Dashboard | docs/dashboard/ | Streamlit app and pages |
- Dashboard entrypoint for the main guided visual experience when working locally.
- Pipeline Map for the GitHub-friendly Markdown summary.
- pipeline_diagram.html for a short static HTML companion.