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- NEXDEP-Nextflow_DNA_Epigenomic_Pipeline Public
Welcome to NEXDEP our Nextflow DNA Epigenomic Pipeline. You can take your DNA based reads from fastq files to bam files. This pipeline will also include processes and workflows for any DNA data that is created from ChIP-seq, Cut&Run, Cut&Tag, ATAC-seq and more assays that rely on some form of peak calling downstream.
- python_script_repo Public Forked from Ryan-Oblivion/python_script_repo
some python scripts to process NRL simulation data for gaussian fitting and then machine learning inference
- NEXPCP-Nextflow_Peak_Calling_Pipeline Public
This will be the home of the Risca lab peak calling pipeline
- apptainer_reproducibility Public Forked from Ryan-Oblivion/apptainer_reproducibility
This is where I will put all my apptainer '.sif' files and any conda '.yml' files that were used to build them
- OpenTn5 Public
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