README for Siefert2024 behavioral data and code. Corresponds to Siefert et al. (2024): https://doi.org/10.1523/JNEUROSCI.0022-24.2024 Contact Liz Siefert (sieferte@pennmedicine.upenn.edu) if you have any questions.
Siefert2024_Analysis.R generates all figures and analyses. Uses the following csv data files: Siefert2024_behavdata.csv, learning_data.csv, cluster_array.csv, sleep_information.csv, cueing_stages.csv. See below for descriptions of each data file.
Trial level data from test, with some additional information added. This is the main data frame that the analyses are based on.
SubNum: subject number
TrialNum: trial number
SatNum: satellite number
- Satellites 1-5 were the studied satellites from the blocked category. 16-19 were the novel satellites in this category.
- Satellites 6-10 were the studied satellites from the interleaved category. 20-23 were the novel satellites in this category.
- Satellites 11-15 were the studied satellites from the uncued category. 24-27 were the novel satellites in this category.
FirstOrSecondPart: whether the trial is testing the first or second part that is covered up, 1 = first part, 2 = second part
Accuracy: 1 = correct, 0 = incorrect
WhichPart: part being tested in that trial. 1 = head, 2 = back, 3 = tail, 4 = back legs, 5 = front legs.
IsUnique: 1 = unique feature is queried, 0 = shared feature is queried
Confidence: confidence in decision, ranging from 1 = very unsure to 5 = very sure, 0 indicates no confidence response
NumberofTimesCued: number of times an individual item was cued
IsNovel: if that item is novel or not
SessionNum: 1 = prenap; 2 = postnap.
TestType: indicates whether the trial tested a shared feature from a studied satellite, a unique feature from a studied satellite, or a feature from a novel satellite (all parts queried on novel satellites were shared features).
CueStyle: indicates whether that item was cued in interleaved order, blocked order, or left uncued
Cued: -1 = uncued, 1 = cued
Trial level data from the learning blocks.
SubNum: subject number
TrialNum: trial number
SatNum: satellite number
BlockNum: learning block
Accuracy: accuracy on that trial (1 = correct; 0 = incorrect; accuracy on first answer/before follow-up corrections implemented)
WhichPart: which part was queried
IsUnique: 1 = unique feature is queried, 0 = shared feature is queried
Power in each cluster for each item within each participant.
SubNum: subject number
SatNum: satellite number
Clust1: power in cluster 1
Clust2: power in cluster 2
Basic sleep statistics for each participant. Here, time is measured in epochs. Each epoch is 30s.
SubNum: subject number
InBed: total epochs spent in bed
TotalSleep: total epochs spent sleeping (N1, N2, N3, REM)
W: epochs spent in wake
N1: epochs spent in N1
N2: epochs spent in N2
N3: epochs spent in N3
REM: epochs spent in REM
MVT: epochs spent moving (epochs scored as movement, and not as any other sleep stage)
SleepFrag: sleep fragmentation index, based on Whitmore et al. (2022; https://doi.org/10.1038/s41539-021-00119-2), Haba-Rubio et al. (2004; https://doi.org/10.1016/j.sleep.2004.06.007)
Number of times an individual item was cued in N2, N3, N1, or W, for each item within each participant.
SubNum: subject number
SatNum: satellite number
N2: number of cues delivered in N2 sleep
N3: number of cues delivered in N3 sleep
N1: number of cues delivered in N1 sleep
W: number of cues delivered in W
*no cues were ever delivered in epochs marked as REM
*all cues marked in epochs of N1 or wake were followed up and confirmed to occur during N2 or N3 and just prior to a change in stage to N1 or wake. Analyses on effects of sleep stage were performed with these cueing edge cases excluded.