Add spatialvista to the ecosystem package registry

[wjwei-handsome]

Mandatory

Name of the tool: spatialvista
https://jianyang-lab.github.io/spatial-vista-py/
Short description: SpatialVista is an interactive 3D spatial transcriptomics visualization tool designed specifically for Jupyter Notebook/Lab. It seamlessly integrates into your data analysis workflow, providing efficient and intuitive exploration of spatial omics data.

How does the package use scverse data structures (please describe in a few sentences): spatialvista uses the scverse AnnData data structure as its primary input format. It supports both in-memory AnnData objects in Jupyter and .h5ad files through its command-line interface.

• The code is publicly available under an OSI-approved license
• The package provides versioned releases: https://github.com/JianYang-Lab/spatial-vista-py/releases/tag/v1.0.0
• The package can be installed from a standard registry (e.g. PyPI, conda-forge, bioconda) pip install spatialvista
• Automated tests cover essential functions of the package and a reasonable range of inputs and conditions [^1]
• Continuous integration (CI) automatically executes these tests on each push or pull request [^2]
• The package provides API documentation via a website or README[^3] https://jianyang-lab.github.io/spatial-vista-py/quickstart/
• The package uses scverse datastructures where appropriate (i.e. AnnData, MuData or SpatialData and their modality-specific extensions)
• I am an author or maintainer of the tool and agree on listing the package on the scverse website
• I agree to abide by the scverse code of conduct on all scverse communication channels

Recommended

• Please announce this package on scverse communication channels (zulip, discourse, twitter)

• Please tag the author(s) these announcements. Handles (e.g. @scverse_team) to include are:

  • Zulip:
  • Discourse:
  • Mastodon:
  • Bluesky:
  • Twitter: @WenjieWei9908

• The package provides tutorials (or "vignettes") that help getting users started quickly

• The package uses the scverse cookiecutter template.

• I would like to be invited to the scverse Github organization