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- Status: Open.#227 In scverse/rustar-aligner;
Dependency discussion: optional rapidgzip feature for parallel gzip input
dependenciesPull requests/issues that update a dependency filePull requests/issues that update a dependency fileStatus: Open.#224 In scverse/rustar-aligner;Align pipeline stops scaling past ~4-8 threads: decode and write are each a single thread
enhancementNew feature or requestNew feature or requestStatus: Open.#223 In scverse/rustar-aligner;Read other compressed input formats (bz2 / zstd / xz): evaluate niffler
dependenciesPull requests/issues that update a dependency filePull requests/issues that update a dependency fileStatus: Open.#218 In scverse/rustar-aligner;GzDecoder truncates multi-member gzip input: reads are silently dropped
bugSomething isn't workingSomething isn't workingStatus: Open.#217 In scverse/rustar-aligner;Audit: does DashMap/HashMap iteration order in the splice-junction path reach any output?
bugSomething isn't workingSomething isn't workingStatus: Open.#210 In scverse/rustar-aligner;docs: add DEPENDENCIES.md recording accepted and declined crates
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#209 In scverse/rustar-aligner;Dependency discussion: interval-overlap crates (superintervals / coitrees / rust-lapper)
dependenciesPull requests/issues that update a dependency filePull requests/issues that update a dependency fileStatus: Open.#208 In scverse/rustar-aligner;deps: noodles 0.113 -> 0.115 and noodles-bgzf 0.49 -> 0.51 (local thread pools, with_worker_count)
dependenciesPull requests/issues that update a dependency filePull requests/issues that update a dependency fileStatus: Open.#207 In scverse/rustar-aligner;--limitBAMsortRAM aborts instead of spilling: evaluate an external sort for coordinate-sorted BAM
enhancementNew feature or requestNew feature or requestStatus: Open.#206 In scverse/rustar-aligner;Dependency discussion: portable SIMD crate (wide/pulp) vs the hand-rolled intrinsics in simd_scan.rs
dependenciesPull requests/issues that update a dependency filePull requests/issues that update a dependency fileStatus: Open.#205 In scverse/rustar-aligner;dev-deps: add a benchmark harness (divan or criterion) — there is no benches/ today
dependenciesPull requests/issues that update a dependency filePull requests/issues that update a dependency fileStatus: Open.#204 In scverse/rustar-aligner;