Skip to content

test: fix pre job #4353

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
flying-sheep merged 1 commit into from
Sep 10, 2026
+6 −8
Merged

test: fix pre job #4353

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 6 additions & 1 deletion src/testing/scanpy/_pytest/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,8 @@
from importlib.util import find_spec
from typing import TYPE_CHECKING

from packaging.version import Version

if sys.version_info < (3, 15):
from types import MappingProxyType as frozendict # noqa: N813

Expand Down Expand Up @@ -48,6 +50,7 @@ def original_settings(
from matplotlib.testing import setup

import scanpy as sc
from scanpy._compat import pkg_version

global _original_settings # noqa: PLW0603
if _original_settings is None:
Expand All @@ -61,7 +64,9 @@ def original_settings(

setup()
sc.settings.preset = sc.Preset.ScanpyV1
ad.settings.zarr_write_format = 3 # default in anndata 0.13, warns otherwise
if pkg_version("anndata") < Version("0.13"):
ad.settings.zarr_write_format = 3
ad.settings.auto_shard_zarr_v3 = True
sc.settings.logfile = sys.stderr
sc.settings.verbosity = sc.Verbosity.hint
sc.settings.autoshow = True
Expand Down
7 changes: 0 additions & 7 deletions tests/conftest.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,6 @@
from textwrap import dedent
from typing import TYPE_CHECKING, TypedDict, cast

import anndata as ad
import pytest

# just import for the IMPORTED check
Expand Down Expand Up @@ -145,9 +144,3 @@ def plt():
def exit_stack() -> Generator[ExitStack]:
with ExitStack() as stack:
yield stack


@pytest.fixture(autouse=True)
def anndata_settings():
ad.settings.auto_shard_zarr_v3 = True
ad.settings.zarr_write_format = 3
Loading