Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
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Sep 1, 2025 - Python
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raw-reads
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A Bioinformatics pipeline to process Raw reads to VCF files in Bash
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Jun 26, 2024 - Shell
A Snakemake-based pipeline for processing and quality-controlling ancient DNA data, including contamination assessment and comparative genomic analysis across time points, producing damage-rescaled, mapped reads ready for downstream analyses.
bioinformatics snakemake pipeline genomics genome bioinformatics-pipeline multiqc fasta bam fastq adna dna-sequencing genome-mapping ancientdna ancient-dna short-reads raw-reads ancient-dna-analysis short-read-mapping
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Apr 2, 2026 - Python
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