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chore(deps): bump the python-dependencies group across 1 directory with 11 updates #4216

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d-v-b merged 3 commits into from
Jul 30, 2026
+371 −327
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chore(deps): bump the python-dependencies group across 1 directory with 11 updates #4216

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5c97ae7
chore(deps): bump the python-dependencies group across 1 directory wi…
dependabot[bot] Jul 30, 2026
2e02dab
Merge branch 'main' into dependabot/uv/python-dependencies-9253c47e15
d-v-b Jul 30, 2026
3de5e6a
fix: satisfy numpy 2.5.1 type stubs in indexing selection normalization
d-v-b Jul 30, 2026
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18 changes: 9 additions & 9 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -94,18 +94,18 @@ homepage = "https://github.com/zarr-developers/zarr-python"
# pins deliberately, e.g. via dependabot or `uv lock --upgrade`.
[dependency-groups]
test = [
"coverage==7.14.3",
"coverage==7.15.2",
"pytest==9.1.1",
"pytest-asyncio==1.4.0",
"pytest-cov==7.1.0",
"pytest-accept==0.3.0",
"numpydoc==1.10.0",
"hypothesis==6.155.7",
"hypothesis==6.160.0",
"pytest-xdist==3.8.0",
"pytest-benchmark==5.2.3",
"pytest-codspeed==5.0.3",
"tomlkit==0.15.0",
"uv==0.11.26",
"tomlkit==0.15.1",
"uv==0.11.31",
]
remote-tests = [
{include-group = "test"},
Expand All @@ -121,15 +121,15 @@ release = [
]
docs = [
# Doc building
"mkdocs-material[imaging]==9.7.6",
"mkdocs-material[imaging]==9.7.7",
"mkdocs==1.6.1",
"mkdocstrings==1.0.4",
"mkdocstrings==1.0.6",
"mkdocstrings-python==2.0.5",
"mike==2.2.0",
"mkdocs-redirects==1.2.3",
"markdown-exec[ansi]==1.12.1",
"markdown-exec[ansi]==1.12.3",
"griffe-inherited-docstrings==1.1.3",
"ruff==0.15.20",
"ruff==0.15.22",
# Changelog generation
{include-group = "release"},
# Optional dependencies to run examples
Expand All @@ -143,7 +143,7 @@ dev = [
{include-group = "remote-tests"},
{include-group = "docs"},
"universal-pathlib",
"mypy==2.1.0",
"mypy==2.3.0",
]

[tool.coverage.report]
Expand Down
5 changes: 3 additions & 2 deletions src/zarr/core/indexing.py
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Expand Up @@ -512,7 +512,8 @@ def replace_ellipsis(selection: Any, shape: tuple[int, ...]) -> SelectionNormali

def replace_lists(selection: SelectionNormalized) -> SelectionNormalized:
return tuple(
np.asarray(dim_sel) if isinstance(dim_sel, list) else dim_sel for dim_sel in selection
cast("ArrayOfIntOrBool", np.asarray(dim_sel)) if isinstance(dim_sel, list) else dim_sel
for dim_sel in selection
)


Expand Down Expand Up @@ -1193,7 +1194,7 @@ def __init__(
# some initial normalization
selection_normalized = cast("CoordinateSelectionNormalized", ensure_tuple(selection))
selection_normalized = tuple(
np.asarray([i]) if is_integer(i) else i for i in selection_normalized
np.asarray([i], dtype=np.intp) if is_integer(i) else i for i in selection_normalized
)
selection_normalized = cast(
"CoordinateSelectionNormalized", replace_lists(selection_normalized)
Expand Down
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