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File formats - #271

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aleidel wants to merge 7 commits into
file_formatsfrom
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Closed

File formats#271
aleidel wants to merge 7 commits into
file_formatsfrom
main

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@aleidel

@aleidel aleidel commented May 20, 2026

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Inferring formats in CWL files.

Currently:

  • assign format from EDAM (we could also use different ontology) when CommandLineTool is created
  • prevent connections of workflow steps with incompatible formats

Questions/Tasks?:

  1. Do we want to display the format in Studio?
  2. Do we want to give users an option to change the format, e.g. in Studio though pencil? Possible to combine this with a step/node description
  3. Do we want to have a label for each input/output: e.g. label: Aligned sequences in BAM format

dependabot Bot and others added 7 commits April 22, 2026 18:36
Bumps the npm_and_yarn group with 1 update in the /docs directory: [astro](https://github.com/withastro/astro/tree/HEAD/packages/astro).


Updates `astro` from 5.18.1 to 6.1.9
- [Release notes](https://github.com/withastro/astro/releases)
- [Changelog](https://github.com/withastro/astro/blob/main/packages/astro/CHANGELOG.md)
- [Commits](https://github.com/withastro/astro/commits/astro@6.1.9/packages/astro)

---
updated-dependencies:
- dependency-name: astro
  dependency-version: 6.1.9
  dependency-type: direct:production
  dependency-group: npm_and_yarn
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [openssl](https://github.com/rust-openssl/rust-openssl) from 0.10.75 to 0.10.78.
- [Release notes](https://github.com/rust-openssl/rust-openssl/releases)
- [Commits](rust-openssl/rust-openssl@openssl-v0.10.75...openssl-v0.10.78)

---
updated-dependencies:
- dependency-name: openssl
  dependency-version: 0.10.78
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
…m_and_yarn-679fa751f5

Bump astro from 5.18.1 to 6.1.9 in /docs in the npm_and_yarn group across 1 directory
@aleidel aleidel closed this May 20, 2026
@JensKrumsieck JensKrumsieck mentioned this pull request Aug 6, 2026
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2 participants